Downloads

Machine-readable exports of the record set, the original expression-summary spreadsheets, and the vector sequence files. The 1870 per-construct files — annotated GenBank sequences, vector maps and sequence PDFs — are linked from each gene record rather than listed here.

Record exports

Generated from the same dataset that builds the pages, so they cannot drift out of step with the site.

All gene records (CSV, 386 rows)All gene records with constructs (JSON)Every construct, one per row (CSV, 3208 rows)Family summary (CSV)

Expression summary spreadsheets

These are the original workbooks from the legacy site, unmodified. They carry the measured expression levels for the constructs, which the individual gene records do not.

Master spreadsheet, 29 Jan 2019 (XLSX)Expression summary, 5 Oct 2016 (XLSX)Bacterial expression summary (XLS)

Destination vector sequences

Vector	System	Files
pGEn1-DEST	Mammalian	Vector map GenBank Sequence (PDF)
pGEn2-DEST	Mammalian	Vector map GenBank Sequence (PDF)
pGEn3-DEST	Mammalian	Vector map GenBank Sequence (PDF)
pGEc1-DEST	Mammalian	Vector map GenBank Sequence (PDF)
pGEc2-DEST	Mammalian	Vector map GenBank Sequence (PDF)
Ac-polh-CtermHisStrep-DEST	Baculovirus	Vector map GenBank Sequence (PDF)
Ac-polh-NtermMelHisStrep-DEST	Baculovirus	Vector map GenBank Sequence (PDF)
Ac-polh-NtermMelHisAviTagGFP-DEST	Baculovirus	Vector map GenBank Sequence (PDF)
pET16-DEST	Bacterial	Vector map GenBank Sequence (PDF)
pET32-DEST	Bacterial	Vector map GenBank Sequence (PDF)

Protocols

Baculovirus expression (PDF)HEK293 PEI transfection (PDF)

Column definitions for the CSV exports

Column	Meaning
gene_symbol	Gene symbol as recorded, including any parenthesised legacy synonym.
symbol	Current gene symbol with the synonym stripped.
synonyms	Legacy synonyms, semicolon-separated.
enzyme_class	GT, GH, Other or Bacterial.
cazy_family	CAZy family label(s) parsed from the record; blank when the enzyme is not CAZy-classified.
uniprot	UniProt accession.
gene_id	NCBI GeneID.
dna_refseq	RefSeq nucleotide accession.
protein_refseq	RefSeq protein accession.
mgc_acc	Mammalian Gene Collection accession of the PCR template.
protein_name	Protein name or GenBank annotation as recorded.
species	Source species; populated for the bacterial homologues.
domain_structure	Membrane topology class of the native enzyme.
truncation_eukaryotic	Truncation applied for eukaryotic hosts.
truncation_bacterial	Truncation applied for the bacterial host.
n_constructs	Number of construct entries on the record.
n_sequence_files	Number of linked GenBank/map/sequence files.
dnasu_clone_ids	All DNASU clone IDs on the record, semicolon-separated.
availability	dnasu, jarvis or pending — see the availability key on any family page.
record_page	Relative path to the record page in this site.

Known gaps in the file set

36 construct file references on the original site pointed at files that server did not hold — requesting them returned 404, so there is nothing to migrate. Those references are kept visible on the affected records, marked unavailable, because the reference is itself evidence the construct was built; they are excluded from the CSV and JSON exports, which list only files that exist. Every other referenced file is present in this site.

The construct export (all_constructs.csv) has one row per construct rather than per gene, and adds construct_kind (entry clone or expression construct), host, vector, fusion_strategy, dnasu_clone_id and files — the site-relative paths of that construct's sequence files, semicolon-separated.